Detailed information of SNP:
|
SNP ID:
sf1020878365(Gbrowse)
Chromosome: chr10 Position: 20878365 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1235 | 91.42% | 8.58% |
| All Indica | 618 | 83.17% | 16.83% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 274 | 75.55% | 24.45% |
| Indica II | 179 | 93.30% | 6.70% |
| Indica Intermediate | 165 | 84.85% | 15.15% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1020878365 | C->G | INTERGENIC | None |