Detailed information of SNP:
|
SNP ID:
sf1020880721(Gbrowse)
Chromosome: chr10 Position: 20880721 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1408 | 90.62% | 9.38% |
| All Indica | 789 | 84.16% | 15.84% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 369 | 79.13% | 20.87% |
| Indica II | 213 | 89.67% | 10.33% |
| Indica Intermediate | 207 | 87.44% | 12.56% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1020880721 | T->C | INTERGENIC | None |