Detailed information of SNP:
|
SNP ID:
sf1020974555(Gbrowse)
Chromosome: chr10 Position: 20974555 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1344 | 97.69% | 2.31% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 428 | 92.76% | 7.24% |
| Aus | 63 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 291 | 91.41% | 8.59% |
| Tropical Japonica | 82 | 97.56% | 2.44% |
| Japonica Intermediate | 55 | 92.73% | 7.27% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1020974555 | C->T | INTERGENIC | None |