Detailed information of SNP:
|
SNP ID:
sf1021029496(Gbrowse)
Chromosome: chr10 Position: 21029496 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1312 | 96.88% | 3.12% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 394 | 90.86% | 9.14% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 260 | 93.85% | 6.15% |
| Tropical Japonica | 84 | 94.05% | 5.95% |
| Japonica Intermediate | 50 | 70.00% | 30.00% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1021029496 | G->A | INTERGENIC | None |