Detailed information of SNP:
|
SNP ID:
sf1021038129(Gbrowse)
Chromosome: chr10 Position: 21038129 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1409 | 95.74% | 4.26% |
| All Indica | 789 | 92.90% | 7.10% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 92.72% | 7.28% |
| Indica II | 211 | 95.73% | 4.27% |
| Indica Intermediate | 207 | 90.34% | 9.66% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1021038129 | T->G | LOC_Os10g39520(LOC_Os10g39520.1) | UTR_3_PRIME |