Detailed information of SNP:
|
SNP ID:
sf1021077177(Gbrowse)
Chromosome: chr10 Position: 21077177 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 55.69% | 44.31% |
| All Indica | 798 | 94.86% | 5.14% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 64 | 12.50% | 87.50% |
| Indica I | 374 | 94.39% | 5.61% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1021077177 | C->T | INTERGENIC | None |