Detailed information of SNP:
|
SNP ID:
sf1021121408(Gbrowse)
Chromosome: chr10 Position: 21121408 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 53.25% | 46.75% |
| All Indica | 797 | 90.84% | 9.16% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 211 | 74.88% | 25.12% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1021121408 | T->C | INTERGENIC | None |