Detailed information of SNP:
|
SNP ID:
sf1021277201(Gbrowse)
Chromosome: chr10 Position: 21277201 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 64.93% | 35.07% |
| All Indica | 798 | 97.62% | 2.38% |
| All Japonica | 497 | 9.46% | 90.54% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 98.40% | 1.60% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 11.34% | 88.66% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1021277201 | G->A | INTERGENIC | None |