Detailed information of SNP:
|
SNP ID:
sf1021422317(Gbrowse)
Chromosome: chr10 Position: 21422317 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1218 | 57.55% | 42.45% |
| All Indica | 605 | 27.77% | 72.23% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 63 | 14.29% | 85.71% |
| Indica I | 284 | 41.20% | 58.80% |
| Indica II | 165 | 13.94% | 86.06% |
| Indica Intermediate | 156 | 17.95% | 82.05% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 58.97% | 41.03% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1021422317 | A->G | INTERGENIC | None |