Detailed information of SNP:
|
SNP ID:
sf1021442965(Gbrowse)
Chromosome: chr10 Position: 21442965 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 54.54% | 45.46% |
| All Indica | 793 | 87.64% | 12.36% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 65 | 76.92% | 23.08% |
| Indica I | 372 | 88.44% | 11.56% |
| Indica II | 213 | 84.98% | 15.02% |
| Indica Intermediate | 208 | 88.94% | 11.06% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1021442965 | G->A | LOC_Os10g40190(LOC_Os10g40190.1) | Non-Synonymous SNP |