Detailed information of SNP:
|
SNP ID:
sf1021442969(Gbrowse)
Chromosome: chr10 Position: 21442969 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 54.31% | 45.69% |
| All Indica | 797 | 87.20% | 12.80% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 66 | 75.76% | 24.24% |
| Indica I | 374 | 88.50% | 11.50% |
| Indica II | 213 | 84.98% | 15.02% |
| Indica Intermediate | 210 | 87.14% | 12.86% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1021442969 | C->T | LOC_Os10g40190(LOC_Os10g40190.1) | Non-Synonymous SNP |