Detailed information of SNP:
|
SNP ID:
sf1021578078(Gbrowse)
Chromosome: chr10 Position: 21578078 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1335 | 97.08% | 2.92% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 417 | 90.89% | 9.11% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 280 | 95.71% | 4.29% |
| Tropical Japonica | 79 | 75.95% | 24.05% |
| Japonica Intermediate | 58 | 87.93% | 12.07% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 97.37% | 2.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1021578078 | G->A | INTERGENIC | None |