Detailed information of SNP:
|
SNP ID:
sf1021603607(Gbrowse)
Chromosome: chr10 Position: 21603607 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1343 | 99.18% | 0.82% |
| All Indica | 797 | 100.00% | 0.00% |
| All Japonica | 426 | 97.65% | 2.35% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 286 | 97.90% | 2.10% |
| Tropical Japonica | 81 | 98.77% | 1.23% |
| Japonica Intermediate | 59 | 94.92% | 5.08% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1021603607 | G->A | LOC_Os10g40480(LOC_Os10g40480.1) | Non-Synonymous SNP |