Detailed information of SNP:
|
SNP ID:
sf1021875430(Gbrowse)
Chromosome: chr10 Position: 21875430 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 59.17% | 40.83% |
| All Indica | 799 | 29.29% | 70.71% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 2.40% | 97.60% |
| Indica II | 213 | 74.65% | 25.35% |
| Indica Intermediate | 211 | 31.28% | 68.72% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1021875430 | A->G | INTERGENIC | None |