Detailed information of SNP:
|
SNP ID:
sf1022022099(Gbrowse)
Chromosome: chr10 Position: 22022099 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1374 | 67.03% | 32.97% |
| All Indica | 755 | 41.32% | 58.68% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 367 | 10.90% | 89.10% |
| Indica II | 203 | 85.71% | 14.29% |
| Indica Intermediate | 185 | 52.97% | 47.03% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1022022099 | G->T | INTERGENIC | None |