Detailed information of SNP:
|
SNP ID:
sf1022049555(Gbrowse)
Chromosome: chr10 Position: 22049555 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 50.07% | 49.93% |
| All Indica | 795 | 14.09% | 85.91% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 372 | 12.10% | 87.90% |
| Indica II | 212 | 17.45% | 82.55% |
| Indica Intermediate | 211 | 14.22% | 85.78% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1022049555 | G->A | INTERGENIC | None |