Detailed information of SNP:
|
SNP ID:
sf1022073957(Gbrowse)
Chromosome: chr10 Position: 22073957 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 50.74% | 49.26% |
| All Indica | 798 | 86.22% | 13.78% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 374 | 88.24% | 11.76% |
| Indica II | 213 | 81.69% | 18.31% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1022073957 | C->G | INTERGENIC | None |