Detailed information of SNP:
|
SNP ID:
sf1022309723(Gbrowse)
Chromosome: chr10 Position: 22309723 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 85.55% | 14.45% |
| All Indica | 793 | 74.91% | 25.09% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 371 | 67.65% | 32.35% |
| Indica II | 212 | 83.02% | 16.98% |
| Indica Intermediate | 210 | 79.52% | 20.48% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1022309723 | C->T | INTERGENIC | None |