Detailed information of SNP:
|
SNP ID:
sf1022314356(Gbrowse)
Chromosome: chr10 Position: 22314356 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1370 | 98.32% | 1.68% |
| All Indica | 751 | 97.07% | 2.93% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 349 | 94.84% | 5.16% |
| Indica II | 199 | 99.50% | 0.50% |
| Indica Intermediate | 203 | 98.52% | 1.48% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1022314356 | T->C | INTERGENIC | None |