Detailed information of SNP:
|
SNP ID:
sf1022328391(Gbrowse)
Chromosome: chr10 Position: 22328391 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1394 | 93.19% | 6.81% |
| All Indica | 779 | 88.32% | 11.68% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 367 | 98.64% | 1.36% |
| Indica II | 208 | 72.12% | 27.88% |
| Indica Intermediate | 204 | 86.27% | 13.73% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1022328391 | C->T | INTERGENIC | None |