Detailed information of SNP:
|
SNP ID:
sf1022466448(Gbrowse)
Chromosome: chr10 Position: 22466448 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1349 | 74.28% | 25.72% |
| All Indica | 732 | 54.23% | 45.77% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 334 | 47.60% | 52.40% |
| Indica II | 201 | 51.74% | 48.26% |
| Indica Intermediate | 197 | 68.02% | 31.98% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1022466448 | C->T | INTERGENIC | None |