Detailed information of SNP:
|
SNP ID:
sf1022469196(Gbrowse)
Chromosome: chr10 Position: 22469196 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 73.43% | 26.57% |
| All Indica | 796 | 99.50% | 0.50% |
| All Japonica | 497 | 36.02% | 63.98% |
| Aus | 66 | 34.85% | 65.15% |
| Indica I | 373 | 99.46% | 0.54% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 35.82% | 64.18% |
| Tropical Japonica | 94 | 50.00% | 50.00% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1022469196 | A->G | INTERGENIC | None |