Detailed information of SNP:
|
SNP ID:
sf1022477289(Gbrowse)
Chromosome: chr10 Position: 22477289 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1390 | 96.62% | 3.38% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 473 | 93.66% | 6.34% |
| Aus | 63 | 76.19% | 23.81% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 322 | 95.03% | 4.97% |
| Tropical Japonica | 91 | 97.80% | 2.20% |
| Japonica Intermediate | 60 | 80.00% | 20.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1022477289 | C->T | INTERGENIC | None |