Detailed information of SNP:
|
SNP ID:
sf1022507092(Gbrowse)
Chromosome: chr10 Position: 22507092 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 59.76% | 40.24% |
| All Indica | 799 | 79.85% | 20.15% |
| All Japonica | 497 | 36.62% | 63.38% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 58.69% | 41.31% |
| Indica Intermediate | 211 | 71.09% | 28.91% |
| Temperate Japonica | 335 | 31.94% | 68.06% |
| Tropical Japonica | 94 | 40.43% | 59.57% |
| Japonica Intermediate | 68 | 54.41% | 45.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1022507092 | C->T | INTERGENIC | None |