Detailed information of SNP:
|
SNP ID:
sf1022507661(Gbrowse)
Chromosome: chr10 Position: 22507661 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 83.51% | 16.49% |
| All Indica | 799 | 96.87% | 3.13% |
| All Japonica | 497 | 63.98% | 36.02% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 63.28% | 36.72% |
| Tropical Japonica | 94 | 53.19% | 46.81% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1022507661 | T->G | LOC_Os10g41999(LOC_Os10g41999.1) | Non-Synonymous SNP |