Detailed information of SNP:
|
SNP ID:
sf1022509435(Gbrowse)
Chromosome: chr10 Position: 22509435 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 80.16% | 19.84% |
| All Indica | 796 | 91.33% | 8.67% |
| All Japonica | 497 | 63.58% | 36.42% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 374 | 91.18% | 8.82% |
| Indica II | 211 | 88.63% | 11.37% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 62.99% | 37.01% |
| Tropical Japonica | 94 | 52.13% | 47.87% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1022509435 | A->G | LOC_Os10g41999(LOC_Os10g41999.1) | INTRON |