Detailed information of SNP:
SNP ID:
sf1022510557(Gbrowse)
Chromosome: chr10 Position: 22510557 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
---|---|---|---|
All | 1411 | 58.89% | 41.11% |
All Indica | 793 | 94.20% | 5.80% |
All Japonica | 497 | 1.01% | 98.99% |
Aus | 67 | 89.55% | 10.45% |
Indica I | 370 | 94.32% | 5.68% |
Indica II | 213 | 93.43% | 6.57% |
Indica Intermediate | 210 | 94.76% | 5.24% |
Temperate Japonica | 335 | 0.00% | 100.00% |
Tropical Japonica | 94 | 5.32% | 94.68% |
Japonica Intermediate | 68 | 0.00% | 100.00% |
Group VI/Aromatic | 14 | 7.14% | 92.86% |
Intermediate | 40 | 45.00% | 55.00% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1022510557 | G->A | LOC_Os10g41999(LOC_Os10g41999.1) | INTRON |