Detailed information of SNP:
|
SNP ID:
sf1022517118(Gbrowse)
Chromosome: chr10 Position: 22517118 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 98.59% | 1.41% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 495 | 95.96% | 4.04% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 83.87% | 16.13% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1022517118 | G->A | LOC_Os10g42020(LOC_Os10g42020.3) | INTRON |
| sf1022517118 | G->A | LOC_Os10g42020(LOC_Os10g42020.2) | INTRON |
| sf1022517118 | G->A | LOC_Os10g42020(LOC_Os10g42020.1) | INTRON |