Detailed information of SNP:
|
SNP ID:
sf1022532783(Gbrowse)
Chromosome: chr10 Position: 22532783 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 81.79% | 18.21% |
| All Indica | 798 | 82.08% | 17.92% |
| All Japonica | 496 | 88.91% | 11.09% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 61.97% | 38.03% |
| Indica Intermediate | 210 | 74.76% | 25.24% |
| Temperate Japonica | 335 | 86.57% | 13.43% |
| Tropical Japonica | 93 | 94.62% | 5.38% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1022532783 | G->T | INTERGENIC | None |