Detailed information of SNP:
|
SNP ID:
sf1022538519(Gbrowse)
Chromosome: chr10 Position: 22538519 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 83.25% | 16.75% |
| All Indica | 796 | 97.36% | 2.64% |
| All Japonica | 497 | 63.58% | 36.42% |
| Aus | 66 | 84.85% | 15.15% |
| Indica I | 373 | 97.59% | 2.41% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 335 | 62.39% | 37.61% |
| Tropical Japonica | 94 | 54.26% | 45.74% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1022538519 | A->G | INTERGENIC | None |