Detailed information of SNP:
|
SNP ID:
sf1022576074(Gbrowse)
Chromosome: chr10 Position: 22576074 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1321 | 74.56% | 25.44% |
| All Indica | 799 | 97.50% | 2.50% |
| All Japonica | 400 | 29.50% | 70.50% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 261 | 15.71% | 84.29% |
| Tropical Japonica | 89 | 64.04% | 35.96% |
| Japonica Intermediate | 50 | 40.00% | 60.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1022576074 | A->G | INTERGENIC | None |