Detailed information of SNP:
|
SNP ID:
sf1022576851(Gbrowse)
Chromosome: chr10 Position: 22576851 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 59.77% | 40.23% |
| All Indica | 792 | 96.09% | 3.91% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 369 | 95.39% | 4.61% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1022576851 | G->A | INTERGENIC | None |