Detailed information of SNP:
|
SNP ID:
sf1022618067(Gbrowse)
Chromosome: chr10 Position: 22618067 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 59.97% | 40.03% |
| All Indica | 799 | 96.12% | 3.88% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1022618067 | G->A | INTERGENIC | None |