Detailed information of SNP:
|
SNP ID:
sf1022682220(Gbrowse)
Chromosome: chr10 Position: 22682220 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 64.14% | 35.86% |
| All Indica | 798 | 74.19% | 25.81% |
| All Japonica | 494 | 44.53% | 55.47% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 62.03% | 37.97% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 211 | 81.04% | 18.96% |
| Temperate Japonica | 335 | 49.25% | 50.75% |
| Tropical Japonica | 93 | 17.20% | 82.80% |
| Japonica Intermediate | 66 | 59.09% | 40.91% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1022682220 | A->G | INTERGENIC | None |