Detailed information of SNP:
|
SNP ID:
sf1022684997(Gbrowse)
Chromosome: chr10 Position: 22684997 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 78.55% | 21.45% |
| All Indica | 799 | 98.50% | 1.50% |
| All Japonica | 496 | 45.36% | 54.64% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 49.25% | 50.75% |
| Tropical Japonica | 94 | 21.28% | 78.72% |
| Japonica Intermediate | 67 | 59.70% | 40.30% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1022684997 | A->G | LOC_Os10g42250(LOC_Os10g42250.2) | UTR_3_PRIME |
| sf1022684997 | A->G | LOC_Os10g42250(LOC_Os10g42250.1) | UTR_3_PRIME |