Detailed information of SNP:
|
SNP ID:
sf1022731384(Gbrowse)
Chromosome: chr10 Position: 22731384 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1336 | 95.88% | 4.12% |
| All Indica | 723 | 93.08% | 6.92% |
| All Japonica | 495 | 99.80% | 0.20% |
| Aus | 62 | 95.16% | 4.84% |
| Indica I | 344 | 94.48% | 5.52% |
| Indica II | 189 | 91.53% | 8.47% |
| Indica Intermediate | 190 | 92.11% | 7.89% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1022731384 | C->T | INTERGENIC | None |