Detailed information of SNP:
|
SNP ID:
sf1022782693(Gbrowse)
Chromosome: chr10 Position: 22782693 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1292 | 86.15% | 13.85% |
| All Indica | 798 | 98.75% | 1.25% |
| All Japonica | 376 | 56.12% | 43.88% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 241 | 41.91% | 58.09% |
| Tropical Japonica | 83 | 89.16% | 10.84% |
| Japonica Intermediate | 52 | 69.23% | 30.77% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 38 | 89.47% | 10.53% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1022782693 | G->C | INTERGENIC | None |