Detailed information of SNP:
|
SNP ID:
sf1022783703(Gbrowse)
Chromosome: chr10 Position: 22783703 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 50.95% | 49.05% |
| All Indica | 797 | 22.96% | 77.04% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 373 | 38.07% | 61.93% |
| Indica II | 213 | 9.86% | 90.14% |
| Indica Intermediate | 211 | 9.48% | 90.52% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1022783703 | A->T | INTERGENIC | None |