Detailed information of SNP:
|
SNP ID:
sf1022829384(Gbrowse)
Chromosome: chr10 Position: 22829384 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1327 | 59.61% | 40.39% |
| All Indica | 712 | 33.99% | 66.01% |
| All Japonica | 495 | 99.39% | 0.61% |
| Aus | 65 | 32.31% | 67.69% |
| Indica I | 331 | 47.13% | 52.87% |
| Indica II | 187 | 21.39% | 78.61% |
| Indica Intermediate | 194 | 23.71% | 76.29% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 96.74% | 3.26% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1022829384 | C->T | LOC_Os10g42480(LOC_Os10g42480.1) | INTRON |