Detailed information of SNP:
|
SNP ID:
sf1022837147(Gbrowse)
Chromosome: chr10 Position: 22837147 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 51.52% | 48.48% |
| All Indica | 797 | 23.34% | 76.66% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 65 | 23.08% | 76.92% |
| Indica I | 374 | 37.43% | 62.57% |
| Indica II | 212 | 12.26% | 87.74% |
| Indica Intermediate | 211 | 9.48% | 90.52% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1022837147 | C->T | INTERGENIC | None |