Detailed information of SNP:
|
SNP ID:
sf1022863021(Gbrowse)
Chromosome: chr10 Position: 22863021 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 85.82% | 14.18% |
| All Indica | 798 | 81.70% | 18.30% |
| All Japonica | 496 | 89.31% | 10.69% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 64.71% | 35.29% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 91.34% | 8.66% |
| Tropical Japonica | 93 | 82.80% | 17.20% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1022863021 | T->C | INTERGENIC | None |