Detailed information of SNP:
|
SNP ID:
sf1023004872(Gbrowse)
Chromosome: chr10 Position: 23004872 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 72.57% | 27.43% |
| All Indica | 799 | 98.75% | 1.25% |
| All Japonica | 497 | 26.76% | 73.24% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 7.46% | 92.54% |
| Tropical Japonica | 94 | 72.34% | 27.66% |
| Japonica Intermediate | 68 | 58.82% | 41.18% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1023004872 | T->C | LOC_Os10g42780(LOC_Os10g42780.2) | INTRON |
| sf1023004872 | T->C | LOC_Os10g42780(LOC_Os10g42780.1) | INTRON |
| sf1023004872 | T->C | LOC_Os10g42780(LOC_Os10g42780.5) | INTRON |
| sf1023004872 | T->C | LOC_Os10g42780(LOC_Os10g42780.3) | INTRON |
| sf1023004872 | T->C | LOC_Os10g42780(LOC_Os10g42780.6) | INTRON |