Detailed information of SNP:
|
SNP ID:
sf1023004885(Gbrowse)
Chromosome: chr10 Position: 23004885 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 90.25% | 9.75% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 494 | 75.51% | 24.49% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 93.11% | 6.89% |
| Tropical Japonica | 92 | 36.96% | 63.04% |
| Japonica Intermediate | 68 | 41.18% | 58.82% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1023004885 | A->T | LOC_Os10g42780(LOC_Os10g42780.2) | INTRON |
| sf1023004885 | A->T | LOC_Os10g42780(LOC_Os10g42780.1) | INTRON |
| sf1023004885 | A->T | LOC_Os10g42780(LOC_Os10g42780.5) | INTRON |
| sf1023004885 | A->T | LOC_Os10g42780(LOC_Os10g42780.3) | INTRON |
| sf1023004885 | A->T | LOC_Os10g42780(LOC_Os10g42780.6) | INTRON |