Detailed information of SNP:
|
SNP ID:
sf1023063000(Gbrowse)
Chromosome: chr10 Position: 23063000 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 57.00% | 43.00% |
| All Indica | 783 | 93.23% | 6.77% |
| All Japonica | 496 | 0.81% | 99.19% |
| Aus | 66 | 63.64% | 36.36% |
| Indica I | 365 | 92.88% | 7.12% |
| Indica II | 210 | 93.33% | 6.67% |
| Indica Intermediate | 208 | 93.75% | 6.25% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 93 | 3.23% | 96.77% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1023063000 | A->G | LOC_Os10g42910(LOC_Os10g42910.1) | Synonymous |