Detailed information of SNP:
|
SNP ID:
sf1023063408(Gbrowse)
Chromosome: chr10 Position: 23063408 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 60.52% | 39.48% |
| All Indica | 797 | 95.73% | 4.27% |
| All Japonica | 496 | 1.01% | 98.99% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 95.44% | 4.56% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 334 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1023063408 | C->T | LOC_Os10g42910(LOC_Os10g42910.1) | Synonymous |