Detailed information of SNP:
|
SNP ID:
sf1023099024(Gbrowse)
Chromosome: chr10 Position: 23099024 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1302 | 87.79% | 12.21% |
| All Indica | 687 | 78.75% | 21.25% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 314 | 76.11% | 23.89% |
| Indica II | 191 | 82.72% | 17.28% |
| Indica Intermediate | 182 | 79.12% | 20.88% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 92.11% | 7.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1023099024 | T->C | LOC_Os10g42999(LOC_Os10g42999.1) | Synonymous |