Detailed information of SNP:
|
SNP ID:
sf1023101306(Gbrowse)
Chromosome: chr10 Position: 23101306 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 61.75% | 38.25% |
| All Indica | 799 | 97.50% | 2.50% |
| All Japonica | 496 | 1.21% | 98.79% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 334 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1023101306 | A->C | LOC_Os10g42999(LOC_Os10g42999.1) | INTRON |