Detailed information of SNP:
|
SNP ID:
sf1100015479(Gbrowse)
Chromosome: chr11 Position: 15479 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1370 | 51.24% | 48.76% |
| All Indica | 765 | 85.36% | 14.64% |
| All Japonica | 491 | 0.00% | 100.00% |
| Aus | 62 | 53.23% | 46.77% |
| Indica I | 347 | 93.37% | 6.63% |
| Indica II | 210 | 66.67% | 33.33% |
| Indica Intermediate | 208 | 90.87% | 9.13% |
| Temperate Japonica | 333 | 0.00% | 100.00% |
| Tropical Japonica | 92 | 0.00% | 100.00% |
| Japonica Intermediate | 66 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 38 | 42.11% | 57.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1100015479 | C->A | INTERGENIC | None |