Detailed information of SNP:
|
SNP ID:
sf1100023654(Gbrowse)
Chromosome: chr11 Position: 23654 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1393 | 92.68% | 7.32% |
| All Indica | 779 | 92.17% | 7.83% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 66 | 54.55% | 45.45% |
| Indica I | 359 | 90.25% | 9.75% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 208 | 87.98% | 12.02% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 39 | 74.36% | 25.64% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1100023654 | G->A | INTERGENIC | None |