Detailed information of SNP:
|
SNP ID:
sf1100065353(Gbrowse)
Chromosome: chr11 Position: 65353 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1405 | 50.68% | 49.32% |
| All Indica | 793 | 85.75% | 14.25% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 63 | 15.87% | 84.13% |
| Indica I | 371 | 97.04% | 2.96% |
| Indica II | 213 | 62.91% | 37.09% |
| Indica Intermediate | 209 | 89.00% | 11.00% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 38 | 34.21% | 65.79% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1100065353 | A->G | INTERGENIC | None |